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Seeing Double: Molecular dynamics simulations reveal the stability of certain alternate protein conformations in crystal structures.

Aviv A. Rosenberg, Sanketh Vedula, Alex M. Bronstein, Ailie Marx

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The end of protein structure prediction: Improving prediction accuracy in chimeric proteins by windowed multiple sequence alignment

Sanketh Vedula, Alex Bronstein, Ailie Marx

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A dataset of alternately located segments in protein crystal structures

Rosenberg AA, Marx A, Bronstein AM. 

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An amino-domino model described by a cross-peptide-bond Ramachandran plot defines amino acid pairs as local structural units.

Rosenberg AA, Yehishalom N, Marx A, Bronstein AM. 

Water stabilizes an alternate turn conformation in horse heart myoglobin
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Bronstein A, Marx A.  

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Codon-specific Ramachandran plots show amino acid backbone conformation depends on identity of the translated codon

Rosenberg AA, Marx A, Bronstein AM.  

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